Registry Sickle Cell Disease Ontology

Logo for Sickle Cell Disease Ontology An ontology for the standardization of terminology and integration of knowledge about Sickle Cell Disease.

Prefix

scdo

Preferred Prefix

SCDO

Keywords

biomedical science genetic disorder obo ontology sickle cell disease

Version

2021-04-15

License

GPL-3.0

Links

Homepage Repository OBO OWL

Contact

Jade Hotchkiss 0000-0002-2193-0704 JadeHotchkiss

Pattern for Local Unique Identifiers

Local identifiers in Sickle Cell Disease Ontology should match this regular expression:
^\d{7}$

Example Local Unique Identifier

0000728 Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Sickle Cell Disease Ontology should match this regular expression:
^SCDO:\d{7}$

Example CURIE

SCDO:0000728

Publications

Ontology

A summary of the relations in the Semantic Farm schema can be found here.

Depends On (31) (bioregistry.schema:0000017 ): APOLLO_SV ARO CHEBI CHMO CMO DOID DRON DUO ENVO EUPATH ExO GAZ GSSO HP HsapDv ICO IDO IDOMAL MP NBO NCIT OBI OGMS OPMI PR SBO STATO SYMP UO VO VT

Metaregistry Sickle Cell Disease Ontology

The metaregistry provides mappings between the Semantic Farm and other registries. There are 7 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`SCDO`
BioPortal	`bioportal`	`SCDO`
FAIRSharing	`fairsharing`	`FAIRsharing.kkq6pw`
OBO Foundry	`obofoundry`	`scdo`
OLS	`ols`	`scdo`
OntoBee	`ontobee`	`SCDO`
Wikidata (E)	`wikidata.entity`	`Q108710019`

RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/SCDO_$1

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0000728 is used to demonstrate the providers available for Sickle Cell Disease Ontology. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Name	Metaprefix	URI
Sickle Cell Disease Ontology	`scdo`	http://purl.obolibrary.org/obo/SCDO_0000728
Sickle Cell Disease Ontology (RDF)	`rdf`	http://purl.obolibrary.org/obo/SCDO_0000728
Bioregistry	`bioregistry`	https://bioregistry.io/scdo:0000728
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/SCDO_0000728
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols4/ontologies/scdo/terms?iri=http://purl.obolibrary.org/obo/SCDO_0000728
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/SCDO/?p=classes&conceptid=http://purl.obolibrary.org/obo/SCDO_0000728

Get the version:

>>> import bioregistry as br
>>> br.get_version("scdo")
'2021-04-15'

This name annotation was originally annotated in OBO Foundry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("scdo")
'Sickle Cell Disease Ontology'

Get the license:

>>> import bioregistry as br
>>> br.get_license("scdo")
'GPL-3.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("scdo")
'https://scdontology.h3abionet.org/'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("scdo")
'https://github.com/scdodev/scdo-ontology'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("scdo")
'http://purl.obolibrary.org/obo/scdo.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("scdo")
'http://purl.obolibrary.org/obo/scdo.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("scdo")
'Jade Hotchkiss'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("scdo")
'giant.plankton@gmail.com'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("scdo")
'JadeHotchkiss'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("scdo")
'0000-0002-2193-0704'