Registry Ontology of Precision Medicine and Investigation

OPMI is a biomedical ontology in the area of precision medicine and its related investigations. It is community-driven and developed by following the OBO Foundry ontology development principles.

Prefix: opmi
Preferred Prefix: OPMI
Keywords: clinical studies disease obo omics ontology
Version: 1.0.166
License: CC-BY-4.0
Links: Homepage Repository OWL
Contact: Yongqun Oliver He 0000-0001-9189-9661 yongqunh
Pattern for Local Unique Identifiers: Local identifiers in Ontology of Precision Medicine and Investigation should match this regular expression:
^\d{7}$
Example Local Unique Identifier: 0000101 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Ontology of Precision Medicine and Investigation should match this regular expression:
^OPMI:\d{7}$
Example CURIE: OPMI:0000101

Ontology

A summary of the relations in the Semantic Farm schema can be found here.

Appears In (2) (bioregistry.schema:0000018 ): LABO SCDO

Metaregistry Ontology of Precision Medicine and Investigation

The metaregistry provides mappings between the Semantic Farm and other registries. There are 7 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`OPMI`
BioPortal	`bioportal`	`OPMI`
FAIRSharing	`fairsharing`	`FAIRsharing.d2d84f`
OBO Foundry	`obofoundry`	`opmi`
OLS	`ols`	`opmi`
OntoBee	`ontobee`	`OPMI`
Wikidata (E)	`wikidata.entity`	`Q81661763`

RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/OPMI_$1

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0000101 is used to demonstrate the providers available for Ontology of Precision Medicine and Investigation. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Name	Metaprefix	URI
Ontology of Precision Medicine and Investigation	`opmi`	http://purl.obolibrary.org/obo/OPMI_0000101
Ontology of Precision Medicine and Investigation (RDF)	`rdf`	http://purl.obolibrary.org/obo/OPMI_0000101
Bioregistry	`bioregistry`	https://bioregistry.io/opmi:0000101
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/OPMI_0000101
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols4/ontologies/opmi/terms?iri=http://purl.obolibrary.org/obo/OPMI_0000101
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/OPMI/?p=classes&conceptid=http://purl.obolibrary.org/obo/OPMI_0000101

Get the version:

>>> import bioregistry as br
>>> br.get_version("opmi")
'1.0.166'

This name annotation was originally annotated in OBO Foundry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("opmi")
'Ontology of Precision Medicine and Investigation'

Get the license:

>>> import bioregistry as br
>>> br.get_license("opmi")
'CC-BY-4.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("opmi")
'https://github.com/OPMI/opmi'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("opmi")
'https://github.com/OPMI/opmi'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("opmi")
'http://purl.obolibrary.org/obo/opmi.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("opmi")
'Yongqun Oliver He'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("opmi")
'yongqunh@med.umich.edu'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("opmi")
'yongqunh'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("opmi")
'0000-0001-9189-9661'