Citing the Bioregistry

This web application is built on top of the Bioregistry, which can be cited with the following:

Hoyt, C. T., et al. (2022) The Unifying the identification of biomedical entities with the Bioregistry. Scientific Data, s41597-022-01807-3

or by using the following LaTeX:

@article{Hoyt2022Bioregistry,
    author  = {Hoyt, Charles Tapley and Balk, Meghan and Callahan, Tiffany J and Domingo-Fern{'{a}}ndez, Daniel and Haendel, Melissa A and Hegde, Harshad B and Himmelstein, Daniel S and Karis, Klas and Kunze, John and Lubiana, Tiago and Matentzoglu, Nicolas and McMurry, Julie and Moxon, Sierra and Mungall, Christopher J and Rutz, Adriano and Unni, Deepak R and Willighagen, Egon and Winston, Donald and Gyori, Benjamin M},
    doi     = {10.1038/s41597-022-01807-3},
    issn    = {2052-4463},
    journal = {Sci. Data},
    number  = {1},
    pages   = {714},
    title   = {Unifying the identification of biomedical entities with the Bioregistry},
    url     = {https://doi.org/10.1038/s41597-022-01807-3},
    volume  = {9},
    year    = {2022}
}

External Resource Acknowledgements

This contains special notes for some external registries used as data sources in the Semantic Farm, when applicable. The remaining information about each data source ingested in the Semantic Farm can be found directly on the registry pages.

AberOWL

⚠️ Data from this resource does not have an explicit license. See https://github.com/biopragmatics/bioregistry/issues/339.

AgroPortal

⚠️ Data from this resource does not have an explicit license. See https://github.com/biopragmatics/bioregistry/issues/336.

Basic Register of Thesauri, Ontologies & Classifications

Data from this resource is redistributed under the PDDL 1.0 license.

BioContext

Licensing information could not be located for this resource.

BioPortal Prefixes

⚠️ Data from this resource does not have an explicit license. See https://github.com/biopragmatics/bioregistry/issues/337.

Biolink Model Registry

Data from this resource is redistributed under the Apache 2.0 license.

Cellosaurus Registry

Data from this resource is redistributed under the CC BY 4.0 license.

Chemical Information Ontology

Data from this resource is redistributed under the CC BY 3.0 license.

Crop Ontology Curation Tool

Data from this resource is redistributed under the CC BY 4.0 license.

EDAM Ontology

Data from this resource is redistributed under the CC BY-SA 4.0 license.

EcoPortal

⚠️ Data from this resource does not have an explicit license. See https://github.com/biopragmatics/bioregistry/issues/338.

FAIRSharing

Data from this resource is redistributed under the CC BY-SA 4.0 license.

Gene Ontology Registry

Data from this resource is redistributed under the CC BY 4.0 license.

HL7 External Code Systems

⚠️ Data from this resource does not have an explicit license. See https://github.com/biopragmatics/bioregistry/issues/586.

Identifiers.org

Data from this resource is redistributed under the CC BY 4.0 license.

Integbio

Data from this resource is redistributed under the CC0 license.

Linked Open Vocabularies

Data from this resource is redistributed under the CC BY 4.0 license.

Name-to-Thing

Data from this resource is redistributed under the CC0 license.

National Center for Biotechnology Information Registry

⚠️ Data from this resource does not have an explicit license. See https://github.com/biopragmatics/bioregistry/issues/342.

OBO Foundry

Data from this resource is redistributed under the CC0 license.

OntoBee

⚠️ Data from this resource does not have an explicit license. See https://github.com/biopragmatics/bioregistry/issues/341.

Ontology Lookup Service

⚠️ Data from this resource does not have an explicit license. See https://github.com/biopragmatics/bioregistry/issues/340.

Pathguide

Data from this resource is redistributed under the Unknown license.

Prefix Commons

Data from this resource is redistributed under the CC0 license.

Prefix.cc

Data from this resource is redistributed under the CC0 license.

Registry of Research Data Repositories

Data from this resource is redistributed under the CC0 license.

Research Resource Identifiers

Data from this resource is redistributed under the CC BY 4.0 license.

TogoID

Data from this resource is redistributed under the CC BY 4.0 license.

UniProt Cross-ref database

Data from this resource is redistributed under the CC BY 4.0 license.

Wikidata Entity

Data from this resource is redistributed under the CC0 license.

Wikidata Property

Data from this resource is redistributed under the CC0 license.

Zazuko Prefix Server

Data from this resource is redistributed under the MIT license.