Identifier Standards
Pattern for Local Unique Identifiers
Local unique identifiers in Gene Ontology should match this regular expression:
^\d{7}$
Example Local Unique Identifier
0032571   Resolve
Pattern for CURIES
Compact URIs (CURIEs) constructed from Gene Ontology should match this regular expression:
^GO:\d{7}$
Example CURIE
GO:0032571
Format String for RDF URIs
http://purl.obolibrary.org/obo/GO_$1
Example RDF URI
http://purl.obolibrary.org/obo/GO_0032571
MIRIAM Namespace Embedded in LUI
The legacy MIRIAM standard for generating CURIEs with this resource annotates the namespaceEmbeddedInLUI as true. This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known as a banana) and therefore look like a CURIE. For , the banana looks like GO:. Therefore, you may see local unique identifiers for this resource that look like GO:0032571 (instead of the canonical form 0032571) and CURIEs for this resource that look like GO:GO:0032571 (instead of the canonical form GO:0032571). The Semantic Farm will automatically strip off the banana when standardizing local unique identifiers and CURIEs.
Mappings to External Registries

Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 24 mappings to external registries with 11 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL AberOWL logo aberowl GO
AgroPortal AgroPortal logo agroportal GO
BARTOC Basic Register of Thesauri, Ontologies & Classifications logo bartoc 572
BioContext biocontext GO
BioPortal BioPortal logo bioportal GO
EDAM EDAM Data logo edam.data 1176
FAIRsharing FAIRsharing logo fairsharing FAIRsharing.6xq0ee
GO go.resource GO
HL7 hl7 6.128
Integbio Integbio logo integbio nbdc00074
Identifiers.org namespace Identifiers.org namespace logo miriam go
N2T n2t go
NCBI ncbi.resource GO
OBO Foundry ontology obofoundry go
OLS EBI Ontology Lookup Service logo ols go
OntoBee OntoBee logo ontobee GO
Pathguide Pathguide logo pathguide 272
Prefix Commons prefixcommons go
re3data Registry of Research Data Repositories logo re3data r3d100014165
TIB-TS tib.ts go
TogoID Ontology togoid Go
UniProt UniProt Resource logo uniprot.resource DB-0037
Wikidata (E) Wikidata Entity logo wikidata.entity Q135085
Wikidata Wikidata Property logo wikidata.property P686
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0032571 is used to demonstrate the providers available for Gene Ontology. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Provider Name Provider Code URI
Gene Ontology go http://purl.obolibrary.org/obo/GO_0032571
Gene Ontology (RDF) rdf http://purl.obolibrary.org/obo/GO_0032571
Bioregistry bioregistry https://bioregistry.io/go:0032571
Identifiers.org namespace miriam https://identifiers.org/GO:0032571
OBO Foundry ontology obofoundry http://purl.obolibrary.org/obo/GO_0032571
EBI Ontology Lookup Service ols https://www.ebi.ac.uk/ols/ontologies/go/terms?iri=http://purl.obolibrary.org/obo/GO_0032571
Name-to-Thing n2t https://n2t.net/go:0032571
BioPortal bioportal https://bioportal.bioontology.org/ontologies/GO/?p=classes&conceptid=http://purl.obolibrary.org/obo/GO_0032571
Extra Providers

Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Provider Name Provider Code URL
GO Browser http://www.informatics.jax.org/searches/GO.cgi?id=GO:0032571
Bio2RDF bio2rdf http://bio2rdf.org/go:0032571
GO Site Link go_site http://www.geneontology.org/GO:0032571
Jackson Laboratories jax http://www.informatics.jax.org/vocab/gene_ontology/GO:0032571
MIRIAM OBO Legacy miriam_obo_legacy http://identifiers.org/obo.go/GO:0032571
neXtProt GO Browser nextprot https://www.nextprot.org/term/GO:0032571
PatherDB pantherdb http://www.pantherdb.org/panther/category.do?categoryAcc=GO:0032571
PURL.org Legacy purlorg http://purl.org/obo/owl/GO#GO_0032571
QuickGO quickgo https://www.ebi.ac.uk/QuickGO/term/GO:0032571
QuickGO (Legacy URL) quickgo.legacy https://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0032571