Registry An ontology of core ecological entities

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Ecocore is a community ontology for the concise and controlled description of ecological traits of organisms.

Prefix: ecocore
Preferred Prefix: ECOCORE
Keywords: obo ontology
Version: 2022-03-09
License: CC-BY-3.0
Links: Homepage Repository OBO OWL
Contact: Pier Luigi Buttigieg 0000-0002-4366-3088 pbuttigieg
Pattern for Local Unique Identifiers: Local identifiers in An ontology of core ecological entities should match this regular expression:
^\d+$
Example Local Unique Identifier: 00000001 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from An ontology of core ecological entities should match this regular expression:
^ECOCORE:\d+$
Example CURIE: ECOCORE:00000001

Ontology

A summary of the relations in the Semantic Farm schema can be found here.

Depends On (10) (bioregistry.schema:0000017 ): BFO CHEBI ENVO GO IAO PATO PCO PO RO UBERON

Metaregistry An ontology of core ecological entities

The metaregistry provides mappings between the Semantic Farm and other registries. There are 8 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`ECOCORE`
BioContext	`biocontext`	`ECOCORE`
BioPortal	`bioportal`	`ECOCORE`
EcoPortal	`ecoportal`	`ECOCORE`
OBO Foundry	`obofoundry`	`ecocore`
OLS	`ols`	`ecocore`
OntoBee	`ontobee`	`ECOCORE`
Wikidata (E)	`wikidata.entity`	`Q81661598`

RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/ECOCORE_$1

Providers

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A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 00000001 is used to demonstrate the providers available for An ontology of core ecological entities. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Name	Metaprefix	URI
An ontology of core ecological entities	`ecocore`	http://purl.obolibrary.org/obo/ECOCORE_00000001
An ontology of core ecological entities (RDF)	`rdf`	http://purl.obolibrary.org/obo/ECOCORE_00000001
Bioregistry	`bioregistry`	https://bioregistry.io/ecocore:00000001
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/ECOCORE_00000001
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols4/ontologies/ecocore/terms?iri=http://purl.obolibrary.org/obo/ECOCORE_00000001
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/ECOCORE/?p=classes&conceptid=http://purl.obolibrary.org/obo/ECOCORE_00000001

Get the version:

>>> import bioregistry as br
>>> br.get_version("ecocore")
'2022-03-09'

This name annotation was originally annotated in OBO Foundry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("ecocore")
'An ontology of core ecological entities'

Get the license:

>>> import bioregistry as br
>>> br.get_license("ecocore")
'CC-BY-3.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("ecocore")
'https://github.com/EcologicalSemantics/ecocore'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("ecocore")
'https://github.com/EcologicalSemantics/ecocore'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("ecocore")
'http://purl.obolibrary.org/obo/ecocore.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("ecocore")
'http://purl.obolibrary.org/obo/ecocore.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("ecocore")
'Pier Luigi Buttigieg'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("ecocore")
'p.buttigieg@gmail.com'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("ecocore")
'pbuttigieg'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("ecocore")
'0000-0002-4366-3088'