The objective of this project is to provide high quality annotation for the rice genome Oryza sativa spp japonica cv Nipponbare. All genes are annotated with functional annotation including expression data, gene ontologies, and tagged lines.

Prefix

ricegap

Alternative Prefixes

rgap

Keywords

dna genome

Links

Homepage

Contact

C. Robin Buell   0000-0002-6727-4677

Pattern for Local Unique Identifiers

Local identifiers in Rice Genome Annotation Project should match this regular expression:
^LOC\_Os\d{1,2}g\d{5}$

Example Local Unique Identifier

LOC_Os02g13300   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Rice Genome Annotation Project should match this regular expression:
^ricegap:LOC\_Os\d{1,2}g\d{5}$

Example CURIE

ricegap:LOC_Os02g13300

Publications

• 2024 The rice genome annotation project: an updated database for mining the rice genome
• 2006 The TIGR Rice Genome Annotation Resource: improvements and new features

The metaregistry provides mappings between the Semantic Farm and other registries. There are 4 mappings to external registries for this resource with 2 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier LOC_Os02g13300 is used to demonstrate the providers available for Rice Genome Annotation Project. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.