Registry KEGG Metagenome

The KEGG Metagenome Database collection information on environmental samples (ecosystems) of genome sequences for multiple species.

Prefix: kegg.metagenome
Keywords: genome
Links: Homepage
Publications: 2011 KEGG for integration and interpretation of large-scale molecular data sets

Identifier Standards

Pattern for Local Unique Identifiers: Local unique identifiers in KEGG Metagenome should match this regular expression:
^T3\d+$
Example Local Unique Identifier: T30002 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from KEGG Metagenome should match this regular expression:
^kegg\.metagenome:T3\d+$
Example CURIE: kegg.metagenome:T30002

Contacts

Contact: Minoru Kanehisa 0000-0001-6123-540X

Ontology

A summary of the relations in the Semantic Farm schema can be found here.

Part Of (bfo:0000050 ): kegg

Mappings to External Registries

Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 4 mappings to external registries with 1 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
BioContext	`biocontext`	`KEGG.METAGENOME`
Identifiers.org	`miriam`	`kegg.metagenome`
N2T	`n2t`	`kegg.metagenome`
Prefix Commons	`prefixcommons`	`kegg.metagenome`

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier T30002 is used to demonstrate the providers available for KEGG Metagenome. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Provider Name	Provider Code	URI
KEGG Metagenome	`kegg.metagenome`	http://www.kegg.jp/entry/T30002
Bioregistry	`bioregistry`	https://bioregistry.io/kegg.metagenome:T30002
Identifiers.org	`miriam`	https://identifiers.org/kegg.metagenome:T30002
Name-to-Thing	`n2t`	https://n2t.net/kegg.metagenome:T30002

Extra Providers

Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Provider Name	Provider Code	URL
Bio2RDF	`bio2rdf`	http://bio2rdf.org/kegg.metagenome:T30002

This name annotation was originally annotated in Identifiers.org and is redistributed under the CC BY 4.0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("kegg.metagenome")
'KEGG Metagenome'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("kegg.metagenome")
'http://www.genome.jp/kegg/catalog/org_list3.html'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("kegg.metagenome")
'Minoru Kanehisa'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("kegg.metagenome")
'kanehisa@kuicr.kyoto-u.ac.jp'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("kegg.metagenome")
'0000-0001-6123-540X'