Kyoto Encyclopedia of Genes and Genomes (KEGG) is a database resource for understanding high-level functions and utilities of the biological system, such as the cell, the organism and the ecosystem, from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies.

Comment

KEGG prefix has been split into several others

Prefix

kegg

Alternative Prefixes

KEGG

Keywords

biopax classification dna enzyme gene genome annotation databases ontology pathway portal protein small molecule

Links

Homepage

Publications

https://bioregistry.io/pubmed:9287494

https://bioregistry.io/pubmed:39417505

2016 KEGG: new perspectives on genomes, pathways, diseases and drugs

https://bioregistry.io/pubmed:24214961

https://bioregistry.io/pubmed:16381885

https://bioregistry.io/pubmed:14681412

Pattern for Local Unique Identifiers

Local unique identifiers in Kyoto Encyclopedia of Genes and Genomes should match this regular expression:
^([CHDEGTMKR]\d+)|(\w+:[\w\d\.-]*)|([a-z]{3,5})|(\w{2,4}\d{5})$

Example Local Unique Identifier

hsa00190   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Kyoto Encyclopedia of Genes and Genomes should match this regular expression:
^kegg:([CHDEGTMKR]\d+)|(\w+:[\w\d\.-]*)|([a-z]{3,5})|(\w{2,4}\d{5})$

Example CURIE

kegg:hsa00190

Format String for RDF URIs

http://www.kegg.jp/entry/$1

Example RDF URI

http://www.kegg.jp/entry/hsa00190

Contact

Missing Contact

A summary of the relations in the Semantic Farm schema can be found here.

Has Parts (bfo:0000051 )

kegg.compound kegg.dgroup kegg.disease kegg.drug kegg.environ kegg.enzyme kegg.genes kegg.genome kegg.glycan kegg.ligand kegg.metagenome kegg.module kegg.orthology kegg.rclass kegg.reaction

In Collection (1)

Synapse.org external links

Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 11 mappings to external registries with 6 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier hsa00190 is used to demonstrate the providers available for Kyoto Encyclopedia of Genes and Genomes. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.