A resource for Dictyostelid discoideum (a soil-dwelling amoeba) genomics
- Prefix
dictybase- Alternative Prefixes
- dictyBase
- Keywords
- anatomy comparative genomics genome life science
- License
- CC-BY-SA-4.0
- Links
- Homepage
- Contact
- Petra Fey 0000-0002-4532-2703 pfey03
- Pattern for Local Unique Identifiers
- Missing LUI pattern
- Example Local Unique Identifier
- DDB0191090 Resolve
- Example CURIE
- dictybase:DDB0191090
- Publications
Ontology
A summary of the relations in the Semantic Farm schema can be found here.
-
Has Parts (
bfo:0000051) - dictybase.gene
Metaregistry dictyBase
The metaregistry provides mappings between the Semantic Farm and other registries. There are 8 mappings to external registries for this resource with 5 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
dictyBase
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.4shj9c
|
|
GO
|
go |
dictyBase
|
|
Integbio
|
integbio |
nbdc00420
|
|
NCBI
|
ncbi |
dictyBase
|
|
Prefix Commons
|
prefixcommons |
dictybase
|
|
re3data
|
re3data |
r3d100010586
|
|
UniProt
|
uniprot |
DB-0015
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier DDB0191090 is used to demonstrate the providers
available for dictyBase. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| dictyBase | dictybase |
http://dictybase.org/gene/DDB0191090 |
| Bioregistry | bioregistry |
https://bioregistry.io/dictybase:DDB0191090 |
Extra Providers
Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Code | Name | URL |
|---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/dictybase:DDB0191090 |