ArchDB is a compilation of structural classifications of loops extracted from known protein structures. Loops in ArchDB have been classified using an improved version (Espadaler et al.) of the original ArchType program published in 1997 by Oliva et al..
- Prefix
archdb- Keywords
- 3d structure classification protein sequence
- Links
- Homepage
- Publications
- 2013 ArchDB 2014: structural classification of loops in proteins
- 2004 ArchDB: automated protein loop classification as a tool for structural genomics
Identifier Standards
- Pattern for Local Unique Identifiers
- Missing LUI pattern
- Example Local Unique Identifier
- 39421 Resolve
- Example CURIE
- archdb:39421
Contacts
- Contact
- Missing Contact
- Reviewer
- Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt
Metaregistry ArchDB
The metaregistry provides mappings between the Semantic Farm and other registries. There are 2 mappings to external registries for this resource with 2 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
Integbio
|
integbio |
nbdc01795
|
|
Prefix Commons
|
prefixcommons |
archdb
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 39421 is used to demonstrate the providers
available for ArchDB. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| ArchDB | archdb |
http://sbi.imim.es/cgi-bin/archdb//loops.pl?loop=39421 |
| Bioregistry | bioregistry |
https://bioregistry.io/archdb:39421 |
Extra Providers
Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Code | Name | URL |
|---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/archdb:39421 |