{"prefix":"archdb","name":"ArchDB","description":"ArchDB is a compilation of structural classifications of loops extracted from known protein structures. The structural classification is based on the geometry and conformation of the loop. The geometry is defined by four internal variables and the type of regular flanking secondary structures, resulting in 10 different loop types. Loops in ArchDB have been classified using an improved version (Espadaler et al.) of the original ArchType program published in 1997 by Oliva et al.","uri_format":"http://sbi.imim.es/cgi-bin/archdb//loops.pl?loop=$1","providers":[{"code":"bio2rdf","name":"Bio2RDF","description":"Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the largest network of Linked Data for the Life Sciences. Bio2RDF defines a set of simple conventions to create RDF(S) compatible Linked Data from a diverse set of heterogeneously formatted sources obtained from multiple data providers.","homepage":"https://bio2rdf.org","uri_format":"http://bio2rdf.org/archdb:$1"}],"homepage":"http://sbi.imim.es/archdb","contact":{"name":"Narcis Fernandez-Fuentes","orcid":"0000-0002-6421-1080","email":"narcis.fernandez@gmail.com"},"example":"39421","example_extras":[],"deprecated":false,"mappings":{"fairsharing":"FAIRsharing.tp9z4q","integbio":"nbdc01795","prefixcommons":"archdb"},"synonyms":[],"keywords":["3d structure","classification","life science","protein","secondary protein structure","sequence"],"publications":[{"pubmed":"24265221","doi":"10.1093/nar/gkt1189","pmc":"PMC3964960","title":"ArchDB 2014: structural classification of loops in proteins","year":2013},{"pubmed":"14681390","doi":"10.1093/nar/gkh002","pmc":"PMC308737","title":"ArchDB: automated protein loop classification as a tool for structural genomics","year":2004}],"appears_in":[],"depends_on":[],"namespace_in_lui":false,"reviewer":{"name":"Charles Tapley Hoyt","orcid":"0000-0003-4423-4370","email":"cthoyt@gmail.com","github":"cthoyt"},"preferred_prefix":"archdb"}