Registry Virus Infectious Disease Ontology

The Virus Infectious Disease Ontology (IDO Virus) is an extension of the Infectious Disease Ontology (IDO). IDO Virus follows OBO Foundry guidelines, employs the Basic Formal Ontology as its starting point, and covers epidemiology, classification, pathogenesis, and treatment of terms used by Virologists, i.e. virus, prion, satellite, viroid, etc.

Prefix: vido
Keywords: ontology
Links: Homepage Repository OWL

Identifier Standards

Pattern for Local Unique Identifiers: Local identifiers in Virus Infectious Disease Ontology should match this regular expression:
^\d{7}$
Example Local Unique Identifier: 0001114 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Virus Infectious Disease Ontology should match this regular expression:
^vido:\d{7}$
Example CURIE: vido:0001114

Contacts

Contact: John Beverly 0000-0002-1118-1738 johnbeve

Mappings to External Registries

Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 3 mappings to external registries with 1 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`VIDO`
BioPortal	`bioportal`	`VIDO`
OntoBee	`ontobee`	`VIDO`

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0001114 is used to demonstrate the providers available for Virus Infectious Disease Ontology. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Provider Name	Provider Code	URI
Virus Infectious Disease Ontology	`vido`	http://purl.obolibrary.org/obo/VIDO_0001114
Bioregistry	`bioregistry`	https://bioregistry.io/vido:0001114

Extra Providers

Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Provider Name	Provider Code	URL
Nonstandard OBO PURL	`obo.1`	http://purl.obolibrary.org/VIDO_0001114

This name annotation was originally annotated in BioPortal Prefixes and is redistributed under the See https://github.com/biopragmatics/bioregistry/issues/337 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("vido")
'Virus Infectious Disease Ontology'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("vido")
'https://github.com/infectious-disease-ontology-extensions/ido-virus'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("vido")
'https://github.com/infectious-disease-ontology-extensions/ido-virus'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("vido")
'https://raw.githubusercontent.com/infectious-disease-ontology-extensions/ido-virus/master/ontology/vido.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("vido")
'John Beverly'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("vido")
'johnbeverley2021@u.northwestern.edu'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("vido")
'johnbeve'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("vido")
'0000-0002-1118-1738'