ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics related to the performance of that matrix in accurately representing the DNA binding specificity of the annotated transcription factor.

This resource is a provider. This means that while it may have its own prefix, it actually reuses the identifiers provided by the hgnc.symbol prefix. For all use cases, you should use hgnc.symbol instead of scretf.

Prefix

scretf

Links

Homepage

Publications

2012 ScerTF: a comprehensive database of benchmarked position weight matrices for Saccharomyces species

References

GitHub Issue https://github.com/biopragmatics/bioregistry/issues/2219

Pattern for Local Unique Identifiers

Local unique identifiers in ScerTF should match this regular expression:
^\w+$

Example Local Unique Identifier

RSC3   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from ScerTF should match this regular expression:
^scretf:\w+$

Example CURIE

scretf:RSC3

Contact

Aaron Spivak   0009-0003-1017-0732   LurkingVariable

Contributor

contributor Aaron Spivak   0009-0003-1017-0732   LurkingVariable

A summary of the relations in the Semantic Farm schema can be found here.

Provides

hgnc.symbol

Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 3 mappings to external registries with 1 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier RSC3 is used to demonstrate the providers available for ScerTF. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.