A structured controlled vocabulary for cross-linking reagents used with proteomics mass spectrometry.

Prefix

xlmod

Preferred Prefix

XLMOD

Keywords

chemical biology experimental measurement gas chromatography mass spectrometry assay mass spectrum metabolomics obo omics ontology reagent

Version

2019-10-28

License

CC-BY-3.0

Links

Homepage Repository OBO OWL

Contact

Gerhard Mayer   0000-0002-1767-2343   germa

Pattern for Local Unique Identifiers

Local identifiers in HUPO-PSI cross-linking and derivatization reagents controlled vocabulary should match this regular expression:
^\d{5}$

Example Local Unique Identifier

00050   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from HUPO-PSI cross-linking and derivatization reagents controlled vocabulary should match this regular expression:
^XLMOD:\d{5}$

Example CURIE

XLMOD:00050

The metaregistry provides mappings between the Semantic Farm and other registries. There are 7 mappings to external registries for this resource with 3 unique external prefixes.

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/XLMOD_$1

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 00050 is used to demonstrate the providers available for HUPO-PSI cross-linking and derivatization reagents controlled vocabulary. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.