UniProt provides proteome sets of proteins whose genomes have been completely sequenced.

Prefix

uniprot.proteome

Links

Homepage Request Discussion

Pattern for Local Unique Identifiers

Local identifiers in UniProt Proteomes should match this regular expression:
^UP\d{9}$

Example Local Unique Identifier

UP000005640   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from UniProt Proteomes should match this regular expression:
^uniprot\.proteome:UP\d{9}$

Example CURIE

uniprot.proteome:UP000005640

Pattern for RDF URIs

http://purl.uniprot.org/proteomes/$1

Example RDF URI

http://purl.uniprot.org/proteomes/UP000005640

Contact

Missing Contact

Contributors

submitter Benjamin M. Gyori   0000-0001-9439-5346   bgyori

contributor JervenBolleman   0000-0002-7449-1266   JervenBolleman

contributor Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt

Reviewer

Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt

A summary of the relations in the Semantic Farm schema can be found here.

In Collection

Synapse.org external links

The metaregistry provides mappings between the Semantic Farm and other registries. There are 1 mappings to external registries for this resource with 1 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier UP000005640 is used to demonstrate the providers available for UniProt Proteomes. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.