The University of Minnesota Biocatalysis/Biodegradation Database (UM-BBD) contains information on microbial biocatalytic reactions and biodegradation pathways for primarily xenobiotic, chemical compounds. The goal of the UM-BBD is to provide information on microbial enzyme-catalyzed reactions that are important for biotechnology. This collection refers to compound information.

Prefix

umbbd.compound

Alternative Prefixes

UM-BBD_compID

Keywords

Links

Homepage Part of umbbd

Pattern for Local Unique Identifiers

Local unique identifiers in UM-BBD compound should match this regular expression:
^c\d+$

Example Local Unique Identifier

c0001   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from UM-BBD compound should match this regular expression:
^umbbd\.compound:c\d+$

Example CURIE

umbbd.compound:c0001

Contact

Missing Contact

Identifier Space Owner

ETH Zurich

A summary of the relations in the Semantic Farm schema can be found here.

In Collection (1)

ChEBI Data Sources

Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 4 mappings to external registries with 2 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier c0001 is used to demonstrate the providers available for UM-BBD compound. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.