The Tetrahymena Genome Database (TGD) Wiki is a database of information about the Tetrahymena thermophila genome sequence. It provides information curated from the literature about each published gene, including a standardized gene name, a link to the genomic locus, gene product annotations utilizing the Gene Ontology, and links to published literature.
- Prefix
tgd- Links
- Homepage
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local unique identifiers in Tetrahymena Genome Database should match this
regular expression:
^TTHERM\_\d+$ - Example Local Unique Identifier
- TTHERM_00648910 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Tetrahymena Genome Database should match
this regular expression:
^tgd:TTHERM\_\d+$ - Example CURIE
- tgd:TTHERM_00648910
Contacts
- Contact
- Missing Contact
Mappings to External Registries
Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 4 mappings to external registries with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
TGD
|
|
GO
|
go |
TGD
|
|
Identifiers.org
|
miriam |
tgd
|
|
N2T
|
n2t |
tgd
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier TTHERM_00648910 is used to demonstrate the providers
available for Tetrahymena Genome Database. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| Tetrahymena Genome Database | tgd |
http://ciliate.org/index.php/feature/details/TTHERM_00648910 |
| Bioregistry | bioregistry |
https://bioregistry.io/tgd:TTHERM_00648910 |
| Identifiers.org | miriam |
https://identifiers.org/tgd:TTHERM_00648910 |
| Name-to-Thing | n2t |
https://n2t.net/tgd:TTHERM_00648910 |