The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. The name of a Locus is unique and used by TAIR, TIGR, and MIPS.
tair.locus
Local identifiers in The Arabidopsis Information Resource should match this
regular expression:
^\d+$
Compact URIs (CURIEs) constructed from The Arabidopsis Information Resource should match
this regular expression:
^tair\.locus:\d+$
The metaregistry provides mappings between the Semantic Farm and other registries. There are 6 mappings to external registries for this resource with 2 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
TAIR.LOCUS
|
|
GO
|
go |
TAIR
|
|
Identifiers.org
|
miriam |
tair.locus
|
|
N2T
|
n2t |
tair.locus
|
|
|
NCBI
|
ncbi |
TAIR
|
|
|
Prefix Commons
|
prefixcommons |
tair.locus
|
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 2200950 is used to demonstrate the providers
available for The Arabidopsis Information Resource. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| The Arabidopsis Information Resource | tair.locus |
https://www.arabidopsis.org/locus?accession=2200950 |
| Bioregistry | bioregistry |
https://bioregistry.io/tair.locus:2200950 |
| Identifiers.org | miriam |
https://identifiers.org/tair.locus:2200950 |
| Name-to-Thing | n2t |
https://n2t.net/tair.locus:2200950 |
Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Code | Name | URL |
|---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/tair.locus:2200950 |
thalemine |
ThaleMine | https://bar.utoronto.ca/thalemine/portal.do?externalids=2200950 |