A database of genome-wide annotations of regulatory sites. It contains annotations for 17 prokaryotes and 3 eukaryotes. The database frontend offers an intuitive interface showing genomic information in a graphical form.

Prefix

swissregulon

Keywords

binding site binding site prediction chip-chip assay chip-seq assay epigenetics expression genome annotation genome/gene interaction/pathway life science literature curation regulatory region sequence transcription factor

Links

Homepage

Publications

2012 SwissRegulon, a database of genome-wide annotations of regulatory sites: recent updates

2006 SwissRegulon: a database of genome-wide annotations of regulatory sites

Pattern for Local Unique Identifiers

Local unique identifiers in SwissRegulon should match this regular expression:
^[A-Za-z0-9]+$

Example Local Unique Identifier

AHR   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from SwissRegulon should match this regular expression:
^swissregulon:[A-Za-z0-9]+$

Example CURIE

swissregulon:AHR

Contact

Erik van Nimwegen   0000-0001-6338-1312

Identifier Space Owner

SIB Swiss Institute of Bioinformatics

Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 5 mappings to external registries with 3 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier AHR is used to demonstrate the providers available for SwissRegulon. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.