SUPERFAMILY provides structural, functional and evolutionary information for proteins from all completely sequenced genomes, and large sequence collections such as UniProt.

Prefix

supfam

Keywords

classification family and domain databases genome protein structure

Links

Homepage

Publications

https://bioregistry.io/pubmed:30445555

2001 Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure

Pattern for Local Unique Identifiers

Local identifiers in SUPERFAMILY should match this regular expression:
^\w+$

Example Local Unique Identifier

SSF57615   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from SUPERFAMILY should match this regular expression:
^supfam:\w+$

Example CURIE

supfam:SSF57615

Contact

Arun Prasad Pandurangan   0000-0001-7168-7143

The metaregistry provides mappings between the Semantic Farm and other registries. There are 5 mappings to external registries for this resource with 3 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier SSF57615 is used to demonstrate the providers available for SUPERFAMILY. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.