SCOP(e) unique identifier. This is simply a number that may be used to reference any entry in the SCOP(e) hierarchy, from root to leaves (Fold, Superfamily, Family, etc.).
- Prefix
scop- Alternative Prefixes
- scop.sunid scop.sun
- Keywords
- life science polypeptide region protein structure
- Links
- Homepage
- Publications
- 1999 SCOP: a Structural Classification of Proteins database
- 1997 SCOP: a structural classification of proteins database
- 2025 GenDiS3 database: census on the prevalence of protein domain superfamilies of known structure in the entire sequence database
- 2000 SCOP: a structural classification of proteins database
- 1998 SCOP, Structural Classification of Proteins database: applications to evaluation of the effectiveness of sequence alignment methods and statistics of protein structural data
- References
- Other https://scop.berkeley.edu/help/#stableidentifiers
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local unique identifiers in Structural Classification of Proteins - Unique Identifier should match this
regular expression:
^\d+$ - Example Local Unique Identifier
- 47419 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Structural Classification of Proteins - Unique Identifier should match
this regular expression:
^scop:\d+$ - Example CURIE
- scop:47419
Contacts
- Contact
-
John-Marc Chandonia
0000-0002-5153-9079
jmchandonia
- Identifier Space Owner
-
University of California, Berkeley
- Contributor
-
creator
Charles Tapley Hoyt
0000-0003-4423-4370
cthoyt
Ontology
A summary of the relations in the Semantic Farm schema can be found here.
- In Collection (1)
- Synapse.org external links
Mappings to External Registries
Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 6 mappings to external registries with 3 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
SCOP
|
|
EDAM
|
edam |
1042
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.wjzty
|
|
Identifiers.org
|
miriam |
scop
|
|
N2T
|
n2t |
scop
|
|
Prefix Commons
|
prefixcommons |
scop
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 47419 is used to demonstrate the providers
available for Structural Classification of Proteins - Unique Identifier. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| Structural Classification of Proteins - Unique Identifier | scop |
http://scop.berkeley.edu/sunid=47419 |
| Bioregistry | bioregistry |
https://bioregistry.io/scop:47419 |
| Identifiers.org | miriam |
https://identifiers.org/scop:47419 |
| Name-to-Thing | n2t |
https://n2t.net/scop:47419 |
Extra Providers
Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/scop:47419 |
| Genomic Distribution of structural Superfamilies | gendis |
https://caps.ncbs.res.in/gendis3/superfamily_display/47419 |
| SCOP at UK Medical Research council (MRC) | mrc |
https://scop.mrc-lmb.cam.ac.uk/term/47419 |