Registry Structural Classification of Proteins - Unique Identifier

SCOP(e) unique identifier. This is simply a number that may be used to reference any entry in the SCOP(e) hierarchy, from root to leaves (Fold, Superfamily, Family, etc.).

Prefix

scop

Alternative Prefixes

scop.sunid scop.sun

Keywords

protein structure

Links

Homepage

Contact

John-Marc Chandonia 0000-0002-5153-9079 jmchandonia

Pattern for Local Unique Identifiers

Local identifiers in Structural Classification of Proteins - Unique Identifier should match this regular expression:
^\d+$

Example Local Unique Identifier

47419 Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Structural Classification of Proteins - Unique Identifier should match this regular expression:
^scop:\d+$

Example CURIE

scop:47419

Publications

References

Other https://scop.berkeley.edu/help/#stableidentifiers

Contributors

submitter Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt

Ontology

A summary of the relations in the Semantic Farm schema can be found here.

In Collection: Synapse.org external links

Metaregistry Structural Classification of Proteins - Unique Identifier

The metaregistry provides mappings between the Semantic Farm and other registries. There are 5 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
BioContext	`biocontext`	`SCOP`
EDAM	`edam`	`1042`
Identifiers.org	`miriam`	`scop`
N2T	`n2t`	`scop`
Prefix Commons	`prefixcommons`	`scop`

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 47419 is used to demonstrate the providers available for Structural Classification of Proteins - Unique Identifier. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Name	Metaprefix	URI
Structural Classification of Proteins - Unique Identifier	`scop`	http://scop.berkeley.edu/sunid=47419
Bioregistry	`bioregistry`	https://bioregistry.io/scop:47419
Identifiers.org	`miriam`	https://identifiers.org/scop:47419
Name-to-Thing	`n2t`	https://n2t.net/scop:47419

Extra Providers

Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code	Name	URL
`bio2rdf`	Bio2RDF	http://bio2rdf.org/scop:47419
`gendis`	Genomic Distribution of structural Superfamilies	https://caps.ncbs.res.in/gendis3/superfamily_display/47419
`mrc`	SCOP at UK Medical Research council (MRC)	https://scop.mrc-lmb.cam.ac.uk/term/47419

Normalize prefixes. This can be any capitalization or punctuation variant of the synonyms listed below.

>>> import bioregistry as br
>>> br.normalize_prefix("scop.sunid")
'scop'

Get all synonyms:

>>> import bioregistry as br
>>> br.get_synonyms("scop")
{'scop.sunid', 'scop.sun'}

This name annotation was originally annotated in Bioregistry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("scop")
'Structural Classification of Proteins - Unique Identifier'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("scop")
'https://scop.berkeley.edu'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("scop")
'John-Marc Chandonia'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("scop")
'JMChandonia@lbl.gov'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("scop")
'jmchandonia'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("scop")
'0000-0002-5153-9079'