SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The EC record provides for a given enzyme classification (EC) the associated list of enzyme-catalysed reactions and their corresponding kinetic data.

This resource is a provider. This means that while it may have its own prefix, it actually reuses the identifiers provided by the ec prefix. For all use cases, you should use ec instead of sabiork.ec.

Prefix

sabiork.ec

Keywords

reaction

Links

Homepage

Contact

Ulrike Wittig   0000-0002-9077-5664

Pattern for Local Unique Identifiers

Local identifiers in SABIO-RK EC Record should match this regular expression:
^((\d+)|(\d+\.\d+)|(\d+\.\d+\.\d+)|(\d+\.\d+\.\d+\.\d+))$

Example Local Unique Identifier

2.7.1.1   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from SABIO-RK EC Record should match this regular expression:
^sabiork\.ec:((\d+)|(\d+\.\d+)|(\d+\.\d+\.\d+)|(\d+\.\d+\.\d+\.\d+))$

Example CURIE

sabiork.ec:2.7.1.1

Publications

2007 Storing and annotating of kinetic data

A summary of the relations in the Semantic Farm schema can be found here.

Provides

EC

The metaregistry provides mappings between the Semantic Farm and other registries. There are 4 mappings to external registries for this resource with 1 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 2.7.1.1 is used to demonstrate the providers available for SABIO-RK EC Record. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.