SABIO-RK is a relational database system that contains information about biochemical reactions, their kinetic equations with their parameters, and the experimental conditions under which these parameters were measured. The EC record provides for a given enzyme classification (EC) the associated list of enzyme-catalysed reactions and their corresponding kinetic data.
This resource is a provider. This means that
while it may have its own prefix, it actually reuses the identifiers provided by the
ec
prefix. For all use cases, you should use ec
instead of sabiork.ec.
- Prefix
sabiork.ec- Keywords
- reaction
- Links
- Homepage
- Publications
- 2007 Storing and annotating of kinetic data
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in SABIO-RK EC Record should match this regular expression:
^((\d+)|(\d+\.\d+)|(\d+\.\d+\.\d+)|(\d+\.\d+\.\d+\.\d+))$ - Example Local Unique Identifier
- 2.7.1.1 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from SABIO-RK EC Record should match this regular expression:
^sabiork\.ec:((\d+)|(\d+\.\d+)|(\d+\.\d+\.\d+)|(\d+\.\d+\.\d+\.\d+))$ - Example CURIE
- sabiork.ec:2.7.1.1
Contacts
- Contact
-
Ulrike Wittig
0000-0002-9077-5664
- Identifier Space Owner
-
Heidelberg Institute for Theoretical Studies (HITS gGmbH)
Mappings to External Registries
Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 4 mappings to external registries with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
SABIORK.EC
|
|
Identifiers.org
|
miriam |
sabiork.ec
|
|
N2T
|
n2t |
sabiork.ec
|
|
Prefix Commons
|
prefixcommons |
sabiork.ec
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 2.7.1.1 is used to demonstrate the providers
available for SABIO-RK EC Record. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| SABIO-RK EC Record | sabiork.ec |
http://sabiork.h-its.org/newSearch?q=ecnumber:2.7.1.1 |
| Bioregistry | bioregistry |
https://bioregistry.io/sabiork.ec:2.7.1.1 |
| Identifiers.org | miriam |
https://identifiers.org/sabiork.ec:2.7.1.1 |
| Name-to-Thing | n2t |
https://n2t.net/sabiork.ec:2.7.1.1 |
Extra Providers
Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/sabiork.ec:2.7.1.1 |