RNAcentral is a public resource that offers integrated access to a comprehensive and up-to-date set of non-coding RNA sequences provided by a collaborating group of Expert Databases.

Prefix

rnacentral

Alternative Prefixes

LNCRNADB

Keywords

bibliography/documents bioinformatics biology expression genome/gene ncrna nucleic acid sequence organism portal rna rna sequence sequence sequence annotation transcript

Links

Homepage

Publications

2019 RNAcentral: a hub of information for non-coding RNA sequences

2016 RNAcentral: a comprehensive database of non-coding RNA sequences

Pattern for Local Unique Identifiers

Local unique identifiers in RNACentral should match this regular expression:
^URS[0-9A-F]{10}(\_\d+)?$

Example Local Unique Identifier

URS0000759CF4   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from RNACentral should match this regular expression:
^rnacentral:URS[0-9A-F]{10}(\_\d+)?$

Example CURIE

rnacentral:URS0000759CF4

Contact

Blake A Sweeney   0000-0002-6497-2883   blakesweeney

Identifier Space Owner

European Bioinformatics Institute

A summary of the relations in the Semantic Farm schema can be found here.

In Collection (1)

Synapse.org external links

Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 10 mappings to external registries with 5 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier URS0000759CF4 is used to demonstrate the providers available for RNACentral. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.