RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
- Prefix
ricenetdb.mirna- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in RiceNetDB miRNA should match this regular expression:
^osa-miR\d{3,5}[a-z]{0,1}$ - Example Local Unique Identifier
- osa-miR446 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from RiceNetDB miRNA should match this regular expression:
^ricenetdb\.mirna:osa-miR\d{3,5}[a-z]{0,1}$ - Example CURIE
- ricenetdb.mirna:osa-miR446
Metaregistry RiceNetDB miRNA
The metaregistry provides mappings between the Semantic Farm and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
RICENETDB.MIRNA
|
|
Identifiers.org
|
miriam |
ricenetdb.mirna
|
|
N2T
|
n2t |
ricenetdb.mirna
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier osa-miR446 is used to demonstrate the providers
available for RiceNetDB miRNA. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| RiceNetDB miRNA | ricenetdb.mirna |
http://bis.zju.edu.cn/ricenetdb/miRNAdetails.php?ID=osa-miR446 |
| Bioregistry | bioregistry |
https://bioregistry.io/ricenetdb.mirna:osa-miR446 |
| Identifiers.org | miriam |
https://identifiers.org/ricenetdb.mirna:osa-miR446 |
| Name-to-Thing | n2t |
https://n2t.net/ricenetdb.mirna:osa-miR446 |