The Reactome project is a collaboration to develop a curated resource of core pathways and reactions in human biology.

Prefix

reactome

Alternative Prefixes

reactome.pathway Reactome RE REACT

Keywords

biopax expression human interaction/pathway ontology pathway protein psi-mi reaction sbml

License

CC0-1.0

Links

Homepage OBO OWL OBO JSON

Publications

https://bioregistry.io/pubmed:29145629

2005 Reactome: a knowledgebase of biological pathways

References

GitHub PR https://github.com/biopragmatics/bioregistry/pull/1086

Pattern for Local Unique Identifiers

Local unique identifiers in Reactome should match this regular expression:
^R-[A-Z]{3}-\d+(-\d+)?(\.\d+)?$

Example Local Unique Identifier

R-BTA-418592   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Reactome should match this regular expression:
^reactome:R-[A-Z]{3}-\d+(-\d+)?(\.\d+)?$

Example CURIE

reactome:R-BTA-418592

Contact

Peter D'Eustachio   0000-0002-5494-626X   deustp01

Contributor

contributor Sierra Moxon   0000-0002-8719-7760   sierra-moxon

A summary of the relations in the Semantic Farm schema can be found here.

In Collection (2)

Global Biodata Coalition - Global Core Biodata Resources Synapse.org external links

Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 12 mappings to external registries with 8 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier R-BTA-418592 is used to demonstrate the providers available for Reactome. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.