Rice Annotation Project Database (RAP-DB) is a primary rice (Oryza sativa) annotation database established in 2004 upon the completion of the Oryza sativa ssp. japonica cv. Nipponbare genome sequencing by the International Rice Genome Sequencing Project. RAP-DB provides comprehensive resources (e.g. genome annotation, gene expression, DNA markers, genetic diversity, etc.) for biological and agricultural research communities. This collection provides transcript information in RAP-DB.

Prefix

rapdb.transcript

Keywords

dna genome

Links

Homepage

Pattern for Local Unique Identifiers

Local identifiers in Rice annotation Project database should match this regular expression:
^Os\S+t\d{7}-\d{2}$

Example Local Unique Identifier

Os01t0883800-02   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Rice annotation Project database should match this regular expression:
^rapdb\.transcript:Os\S+t\d{7}-\d{2}$

Example CURIE

rapdb.transcript:Os01t0883800-02

Contact

Missing Contact

The metaregistry provides mappings between the Semantic Farm and other registries. There are 4 mappings to external registries for this resource with 3 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier Os01t0883800-02 is used to demonstrate the providers available for Rice annotation Project database. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.