PLANT REACTOME is an open-source, open access, manually curated and peer-reviewed pathway database. Pathway annotations are authored by expert biologists, in collaboration with the Reactome editorial staff and cross-referenced to many bioinformatics databases. These include project databases like Gramene, Ensembl, UniProt, ChEBI small molecule databases, PubMed, and Gene Ontology.

Prefix

plant_reactome

Keywords

biopax psi-mi sbml

Links

Homepage

Pattern for Local Unique Identifiers

Local identifiers in Plant Reactome should match this regular expression:
^R-[A-Z]{3}-\d+(-\d+)?(\.\d+)?$

Example Local Unique Identifier

R-ACH-1120024   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Plant Reactome should match this regular expression:
^plant_reactome:R-[A-Z]{3}-\d+(-\d+)?(\.\d+)?$

Example CURIE

plant_reactome:R-ACH-1120024

Contact

Missing Contact

The metaregistry provides mappings between the Semantic Farm and other registries. There are 2 mappings to external registries for this resource with 2 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier R-ACH-1120024 is used to demonstrate the providers available for Plant Reactome. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.