Phytozome is a project to facilitate comparative genomic studies amongst green plants. Famlies of orthologous and paralogous genes that represent the modern descendents of ancestral gene sets are constructed at key phylogenetic nodes. These families allow easy access to clade specific orthology/paralogy relationships as well as clade specific genes and gene expansions. This collection references locus information.
- Prefix
phytozome.locus- Alternative Prefixes
- JGI Phytozome
- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in Plant Genome Network should match this regular expression:
^[A-Za-z0-9]+$ - Example Local Unique Identifier
- Glyma0021s00410 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Plant Genome Network should match this regular expression:
^phytozome\.locus:[A-Za-z0-9]+$ - Example CURIE
- phytozome.locus:Glyma0021s00410
Metaregistry Plant Genome Network
The metaregistry provides mappings between the Semantic Farm and other registries. There are 4 mappings to external registries for this resource with 2 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
PHYTOZOME.LOCUS
|
|
Identifiers.org
|
miriam |
phytozome.locus
|
|
N2T
|
n2t |
phytozome.locus
|
|
NCBI
|
ncbi |
Phytozome
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier Glyma0021s00410 is used to demonstrate the providers
available for Plant Genome Network. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.