Higher order grouping of Pfam families
- Prefix
pfam.clan- Keywords
- protein family
- License
- CC0-1.0
- Links
- Homepage
- Contact
- Alex Bateman 0000-0002-6982-4660 bateman-research
- Pattern for Local Unique Identifiers
-
Local identifiers in Pfam protein clan should match this regular expression:
^CL\d+$ - Example Local Unique Identifier
- CL0192 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Pfam protein clan should match this regular expression:
^pfam\.clan:CL\d+$ - Example CURIE
- pfam.clan:CL0192
- References
- Tweet https://twitter.com/PfamDB/status/1555149527228813314
- Contributors
-
- submitter Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt
Ontology
A summary of the relations in the Semantic Farm schema can be found here.
- In Collection
- Synapse.org external links
Metaregistry Pfam protein clan
The metaregistry provides mappings between the Semantic Farm and other registries. There are 1 mappings to external registries for this resource with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
EDAM
|
edam |
2758
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier CL0192 is used to demonstrate the providers
available for Pfam protein clan. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| Pfam protein clan | pfam.clan |
https://www.ebi.ac.uk/interpro/set/pfam/CL0192 |
| Bioregistry | bioregistry |
https://bioregistry.io/pfam.clan:CL0192 |
Extra Providers
Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Code | Name | URL |
|---|---|---|
xfam |
Xfam | https://pfam.xfam.org/clan/CL0192 |