Higher order grouping of Pfam families

Prefix

pfam.clan

Keywords

ontology protein family

License

CC0-1.0

Links

Homepage OBO OWL OBO JSON

References

Other https://twitter.com/PfamDB/status/1555149527228813314

Pattern for Local Unique Identifiers

Local identifiers in Pfam protein clan should match this regular expression:
^CL\d+$

Example Local Unique Identifier

CL0192   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Pfam protein clan should match this regular expression:
^pfam\.clan:CL\d+$

Example CURIE

pfam.clan:CL0192

Contact

Alex Bateman   0000-0002-6982-4660   bateman-research

Contributors

submitter Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt

A summary of the relations in the Semantic Farm schema can be found here.

In Collection (1)

Synapse.org external links

Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 1 mapping to an external registry.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier CL0192 is used to demonstrate the providers available for Pfam protein clan. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.