The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins.

Prefix

ped

Keywords

curated information intrinsically disordered proteins protein structure proteomics structural biology

Links

Homepage

Publications

2024 PED in 2024: improving the community deposition of structural ensembles for intrinsically disordered proteins

2021 PED in 2021: a major update of the protein ensemble database for intrinsically disordered proteins

2019 Plant editosome database: a curated database of RNA editosome in plants

Pattern for Local Unique Identifiers

Local unique identifiers in Protein Ensemble Database should match this regular expression:
^PED\d{5}$

Example Local Unique Identifier

PED00037   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Protein Ensemble Database should match this regular expression:
^ped:PED\d{5}$

Example CURIE

ped:PED00037

Contact

Zhang Zhang   0000-0001-6603-5060

Identifier Space Owner

University of Padua

A summary of the relations in the Semantic Farm schema can be found here.

Has Parts (bfo:0000051 )

ped.ensemble

Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 2 mappings to external registries with 2 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier PED00037 is used to demonstrate the providers available for Protein Ensemble Database. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.