The Protein Ensemble Database is an open access database for the deposition of structural ensembles, including intrinsically disordered proteins.
- Prefix
ped- Links
- Homepage
- Publications
- 2019 Plant editosome database: a curated database of RNA editosome in plants
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in Protein Ensemble Database should match this regular expression:
^PED\d{5}$ - Example Local Unique Identifier
- PED00037 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Protein Ensemble Database should match this regular expression:
^ped:PED\d{5}$ - Example CURIE
- ped:PED00037
Contacts
- Contact
- Zhang Zhang 0000-0001-6603-5060
Ontology
A summary of the relations in the Semantic Farm schema can be found here.
-
Has Parts (
bfo:0000051) - ped.ensemble
Metaregistry Protein Ensemble Database
The metaregistry provides mappings between the Semantic Farm and other registries. There are 1 mappings to external registries for this resource with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
Identifiers.org
|
miriam |
ped
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier PED00037 is used to demonstrate the providers
available for Protein Ensemble Database. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| Protein Ensemble Database | ped |
https://proteinensemble.org/PED00037 |
| Bioregistry | bioregistry |
https://bioregistry.io/ped:PED00037 |
| Identifiers.org | miriam |
https://identifiers.org/ped:PED00037 |