Registry Proteomic Data Commons

The National Cancer Institute's Proteomic Data Commons (PDC) makes cancer-related proteomic datasets easily accessible to the public.

Prefix: pdc.study
Links: Homepage Request Discussion

Identifier Standards

Pattern for Local Unique Identifiers: Local identifiers in Proteomic Data Commons should match this regular expression:
^PDC\d+$
Example Local Unique Identifier: PDC000351 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Proteomic Data Commons should match this regular expression:
^pdc\.study:PDC\d+$
Example CURIE: pdc.study:PDC000351

Contacts

Contact: Missing Contact
Contributors: submitter Benjamin M. Gyori 0000-0001-9439-5346 bgyori
Reviewer: Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt

Ontology

A summary of the relations in the Semantic Farm schema can be found here.

In Collection: Synapse.org external links

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier PDC000351 is used to demonstrate the providers available for Proteomic Data Commons. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Name	Metaprefix	URI
Proteomic Data Commons	`pdc.study`	https://pdc.cancer.gov/pdc/study/PDC000351
Bioregistry	`bioregistry`	https://bioregistry.io/pdc.study:PDC000351

This name annotation was originally annotated in Bioregistry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("pdc.study")
'Proteomic Data Commons'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("pdc.study")
'https://pdc.cancer.gov/pdc'