Online Mendelian Inheritance in Animals (OMIA) is a catalogue/compendium of inherited disorders, other (single-locus) traits, and associated genes and variants in more than 500 vertebrate animal species (other than human, mouse, rats, zebrafish and western clawed frog, which have their own resources). The 'omia' prefix is used for phenes, either across species (omia:001000) or in a specific species (omia:001000-9615)
- Prefix
omia- Alternative Prefixes
- OMIA
- Keywords
- animal genetics bibliography/documents biology classification disorder disorders gene genetic disorder genome/gene health/disease model organism database phenotype traits
- Links
- Homepage Part of omia
- Publications
- 2024 Online Mendelian Inheritance in Animals (OMIA): a genetic resource for vertebrate animals
- 2020 Online Mendelian Inheritance in Animals (OMIA): a record of advances in animal genetics, freely available on the Internet for 25 years
- 2005 OMIA (Online Mendelian Inheritance in Animals): an enhanced platform and integration into the Entrez search interface at NCBI
- 2003 Online Mendelian Inheritance in Animals (OMIA): a comparative knowledgebase of genetic disorders and other familial traits in non-laboratory animals
- https://bioregistry.io/pubmed:
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local unique identifiers in Online Mendelian Inheritance in Animals should match this
regular expression:
^\d{6}(-\d+)?$ - Example Local Unique Identifiers
-
001000
Resolve
001000-9615 Resolve - Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Online Mendelian Inheritance in Animals should match
this regular expression:
^omia:\d{6}(-\d+)?$ - Example CURIEs
-
omia:001000
omia:001000-9615
Contacts
- Contact
-
Imke Tammen
0000-0002-5520-6597
ImkeTammen
- Contributor
-
contributor
Imke Tammen
0000-0002-5520-6597
ImkeTammen
Mappings to External Registries
Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 6 mappings to external registries with 3 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
OMIA
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.tpey2t
|
|
Integbio
|
integbio |
nbdc00153
|
|
Identifiers.org
|
miriam |
omia
|
|
N2T
|
n2t |
omia
|
|
Prefix Commons
|
prefixcommons |
omia
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 001000 is used to demonstrate the providers
available for Online Mendelian Inheritance in Animals. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| Online Mendelian Inheritance in Animals | omia |
https://omia.org/phene/omia:001000 |
| Bioregistry | bioregistry |
https://bioregistry.io/omia:001000 |
| Identifiers.org | miriam |
https://identifiers.org/omia:001000 |
| Name-to-Thing | n2t |
https://n2t.net/omia:001000 |
Extra Providers
Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Provider Name | Provider Code | URL |
|---|---|---|
| Bio2RDF | bio2rdf |
http://bio2rdf.org/omia:001000 |