OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references individual protein records.

Prefix

oma.protein

Keywords

protein

Links

Homepage

Pattern for Local Unique Identifiers

Local unique identifiers in OMA Protein should match this regular expression:
^[A-Z0-9]{5}\d+$

Example Local Unique Identifier

HUMAN16963   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from OMA Protein should match this regular expression:
^oma\.protein:[A-Z0-9]{5}\d+$

Example CURIE

oma.protein:HUMAN16963

Contact

Missing Contact

Identifier Space Owner

ETH Zurich

Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 4 mappings to external registries with 2 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier HUMAN16963 is used to demonstrate the providers available for OMA Protein. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.