OMA (Orthologous MAtrix) is a database that identifies orthologs among publicly available, complete genome sequences. It identifies orthologous relationships which can be accessed either group-wise, where all group members are orthologous to all other group members, or on a sequence-centric basis, where for a given protein all its orthologs in all other species are displayed. This collection references groupings of orthologs.
- Prefix
oma.grp- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in OMA Group should match this regular expression:
^[A-Z]+$ - Example Local Unique Identifier
- LCSCCPN Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from OMA Group should match this regular expression:
^oma\.grp:[A-Z]+$ - Example CURIE
- oma.grp:LCSCCPN
Metaregistry OMA Group
The metaregistry provides mappings between the Semantic Farm and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
OMA.GRP
|
|
Identifiers.org
|
miriam |
oma.grp
|
|
N2T
|
n2t |
oma.grp
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier LCSCCPN is used to demonstrate the providers
available for OMA Group. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| OMA Group | oma.grp |
https://omabrowser.org/cgi-bin/gateway.pl?f=DisplayGroup&p1=LCSCCPN |
| Bioregistry | bioregistry |
https://bioregistry.io/oma.grp:LCSCCPN |
| Identifiers.org | miriam |
https://identifiers.org/oma.grp:LCSCCPN |
| Name-to-Thing | n2t |
https://n2t.net/oma.grp:LCSCCPN |