Registry NIF Standard Ontology: Cell Types

Suggest

NLXCELL conatins cell types with a focus on neuron types.

Prefix: nlx.cell
Alternative Prefixes: NLXCELL
Keywords: cell lines cell types cells neuroscience
License: CC-BY-4.0
Links: Homepage Repository Part of nif

Identifier Standards

Pattern for Local Unique Identifiers: Local unique identifiers in NIF Standard Ontology: Cell Types should match this regular expression:
^\d+$
Example Local Unique Identifier: 091005 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from NIF Standard Ontology: Cell Types should match this regular expression:
^nlx\.cell:\d+$
Example CURIE: nlx.cell:091005

Contacts

Contact: Tom Gillespie 0000-0002-7509-4801 tgbugs
Contributor: creator Tom Gillespie 0000-0002-7509-4801 tgbugs
Reviewer: Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 091005 is used to demonstrate the providers available for NIF Standard Ontology: Cell Types. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Provider Name	Provider Code	URI
NIF Standard Ontology: Cell Types	`nlx.cell`	http://uri.neuinfo.org/nif/nifstd/nlx_cell_091005
Bioregistry	`bioregistry`	https://bioregistry.io/nlx.cell:091005

Normalize prefixes. This can be any capitalization or punctuation variant of the synonyms listed below.

>>> import bioregistry as br
>>> br.normalize_prefix("NLXCELL")
'nlx.cell'

Get all synonyms:

>>> import bioregistry as br
>>> br.get_synonyms("nlx.cell")
{'NLXCELL'}

This name annotation was originally annotated in Bioregistry and is redistributed under the CC0-1.0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("nlx.cell")
'NIF Standard Ontology: Cell Types'

Get the license:

>>> import bioregistry as br
>>> br.get_license("nlx.cell")
'CC-BY-4.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("nlx.cell")
'https://github.com/SciCrunch/NIF-Ontology'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("nlx.cell")
'https://github.com/SciCrunch/NIF-Ontology'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("nlx.cell")
'Tom Gillespie'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("nlx.cell")
'tgbugs@gmail.com'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("nlx.cell")
'tgbugs'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("nlx.cell")
'0000-0002-7509-4801'