Registry NIF Standard Ontology

NIFSTD is a base namespace (like obo:) which houses many other prefixes. Sometimes NIFSTD prefixed identifiers appear undifferentiated, but usually if it shows up it means that another prefix definition is missing when serializing.

Prefix: nif.std
Alternative Prefixes: NIFSTD
Keywords: brain disease neuroscience ontology
Version: 3.1 - January 15, 2018
License: CC-BY-4.0
Links: Homepage Repository Part of nif
Publications: 2008 The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience

Identifier Standards

Pattern for Local Unique Identifiers: Local unique identifiers in NIF Standard Ontology should match this regular expression:
^BAMSC\d+$
Example Local Unique Identifier: BAMSC981 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from NIF Standard Ontology should match this regular expression:
^nif\.std:BAMSC\d+$
Example CURIE: nif.std:BAMSC981

Contacts

Contact: Tom Gillespie 0000-0002-7509-4801 tgbugs
Contributor: creator Tom Gillespie 0000-0002-7509-4801 tgbugs
Reviewer: Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt

Mappings to External Registries

Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 2 mappings to external registries with 2 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix	Curate
BioPortal	`bioportal`	`NIFSTD`
FAIRsharing	`fairsharing`	`FAIRsharing.vgw1m6`

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier BAMSC981 is used to demonstrate the providers available for NIF Standard Ontology. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Provider Name	Provider Code	URI
NIF Standard Ontology	`nif.std`	http://uri.neuinfo.org/nif/nifstd/BAMSC981
Bioregistry	`bioregistry`	https://bioregistry.io/nif.std:BAMSC981

Normalize prefixes. This can be any capitalization or punctuation variant of the synonyms listed below.

>>> import bioregistry as br
>>> br.normalize_prefix("NIFSTD")
'nif.std'

Get all synonyms:

>>> import bioregistry as br
>>> br.get_synonyms("nif.std")
{'NIFSTD'}

Get the version:

>>> import bioregistry as br
>>> br.get_version("nif.std")
'3.1 - January 15, 2018'

This name annotation was originally annotated in Bioregistry and is redistributed under the CC0-1.0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("nif.std")
'NIF Standard Ontology'

Get the license:

>>> import bioregistry as br
>>> br.get_license("nif.std")
'CC-BY-4.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("nif.std")
'https://github.com/SciCrunch/NIF-Ontology'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("nif.std")
'https://github.com/SciCrunch/NIF-Ontology'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("nif.std")
'Tom Gillespie'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("nif.std")
'tgbugs@gmail.com'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("nif.std")
'tgbugs'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("nif.std")
'0000-0002-7509-4801'