A database providing information on the structure of assembled genomes, assembly names and other meta-data, statistical reports, and links to genomic sequence data.

Prefix

ncbi.assembly

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in Assembly should match this regular expression:
^[a-zA-Z0-9_\.]+$

Example Local Unique Identifier

GCF_000005845.2   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Assembly should match this regular expression:
^ncbi\.assembly:[a-zA-Z0-9_\.]+$

Example CURIE

ncbi.assembly:GCF_000005845.2

A summary of the relations in the Semantic Farm schema can be found here.

Has incoming URI collisions

The following resources share a URI format string with ncbi.assembly:
insdc.gca insdc.gcf

When generating an extended prefix map, their respective CURIE prefixes and URI prefixes are merged into the record for ncbi.assembly. If you believe that these are distinct semantic spaces and should not be merged, please open a new issue on the Semantic Farm issue tracker for discussion.

The metaregistry provides mappings between the Semantic Farm and other registries. There are 3 mappings to external registries for this resource with 3 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier GCF_000005845.2 is used to demonstrate the providers available for Assembly. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.