Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria tuberculosis information.

Prefix

myco.tuber

Alternative Prefixes

TubercuList

Keywords

dna genome protein

Links

Homepage

Contact

Stewart Thomas Cole   0000-0003-1400-5585

Pattern for Local Unique Identifiers

Local identifiers in TubercuList knowledge base should match this regular expression:
^Rv\d{4}(A|B|c)?$

Example Local Unique Identifier

Rv1908c   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from TubercuList knowledge base should match this regular expression:
^myco\.tuber:Rv\d{4}(A|B|c)?$

Example CURIE

myco.tuber:Rv1908c

Publications

2010 The MycoBrowser portal: a comprehensive and manually annotated resource for mycobacterial genomes

A summary of the relations in the Semantic Farm schema can be found here.

Part Of (bfo:0000050 )

myco

The metaregistry provides mappings between the Semantic Farm and other registries. There are 6 mappings to external registries for this resource with 3 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier Rv1908c is used to demonstrate the providers available for TubercuList knowledge base. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.