MolMeDB is an open chemistry database about interactions of molecules with membranes. We collect information on how chemicals interact with individual membranes either from experiment or from simulations.

Prefix

molmedb

Keywords

accuracy affinity annotation assay binding biochemistry cellular localization channel chemical entity chemical formula chemical probes chemical screen chemical structure image cheminformatics chemistry classification computational chemistry curated information drug drug name drug report drug structure enzyme commission number hydrophilicity hydrophobicity inhibitory constant ligand lipid literature annotations defined by experimental results metabolite molecular biology molecular chemistry molecular dynamics molecular entity molecular interaction molecular physical chemistry molecular weight molecular_function nutrient probe protein name quantitative structure-activity relationship reagent small molecule small molecule binding structure transport validation

Links

Homepage

Pattern for Local Unique Identifiers

Local unique identifiers in MolMeDB should match this regular expression:
^[Mm]{2}[0-9]{5,}(\.[0-9]+)?$

Example Local Unique Identifier

MM00040   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from MolMeDB should match this regular expression:
^molmedb:[Mm]{2}[0-9]{5,}(\.[0-9]+)?$

Example CURIE

molmedb:MM00040

Contact

Karel Berka   0000-0001-9472-2589   KarelBerka

Identifier Space Owner

Palacký University, Olomouc

Contributor

contributor Dominik Martinat   0000-0001-6611-7883   DominikMartinat

Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 2 mappings to external registries with 2 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier MM00040 is used to demonstrate the providers available for MolMeDB. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.