The GSC family of minimum information standards (checklists) – Minimum Information about any (x) Sequence (MIxS). MIxS identifiers are for terms describing an aspect of an environmental sample.

Comment

Some things to be decided before granting - [ ] should the prefix be mixs, gsc.mixs, MIxS, MIXS, ...? - [ ] MIxS terms are most commonly identified by a short computable stable label, e.g ph_regm. The GSC CIG team are creating numeric identifiers, e.g. MIXS:0001056 - Should we support both schemes? - If we do, should these be different prefixes? I would strongly recommend this. E.g. mixs.term:ph_regm, mixs:0001056. We can then have different regex patterns for both Additional notes: - It currently redirects to the tdwg wiki but this is I assume temporary

Prefix

mixs

Preferred Prefix

MIXS

Keywords

ontology

Links

Homepage OWL Request Discussion

Contact

Mark Andrew Miller   0000-0001-9076-6066   turbomam

Pattern for Local Unique Identifiers

Local identifiers in Minimum Information about any (x) Sequence should match this regular expression:
^\d{7}$

Example Local Unique Identifier

0001056   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Minimum Information about any (x) Sequence should match this regular expression:
^MIXS:\d{7}$

Example CURIE

MIXS:0001056

Publications

2011 Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

References

GitHub PR https://github.com/biopragmatics/bioregistry/pull/1738

Contributors

• submitter Chris Mungall   0000-0002-6601-2165   cmungall
• contributor Chris Hunter   0000-0002-1335-0881   only1chunts
• contributor Lindsey N. Anderson   0000-0002-8741-7823   lnanderson
• contributor Mark Andrew Miller   0000-0001-9076-6066   turbomam

Reviewer

Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt

The metaregistry provides mappings between the Semantic Farm and other registries. There are 3 mappings to external registries for this resource with 2 unique external prefixes.

When using this resource in RDF, the following URI format should be used:

https://w3id.org/mixs/$1

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0001056 is used to demonstrate the providers available for Minimum Information about any (x) Sequence. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.