MatrixDB stores experimentally determined interactions involving at least one extracellular biomolecule. It includes mostly protein-protein and protein-glycosaminoglycan interactions, as well as interactions with lipids and cations.

Prefix

matrixdb.association

Keywords

Links

Homepage Part of matrixdb

Pattern for Local Unique Identifiers

Local unique identifiers in MatrixDB Association should match this regular expression:
^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$

Example Local Unique Identifier

P00747__P07355   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from MatrixDB Association should match this regular expression:
^matrixdb\.association:([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])_.*|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9]_.*)|(GAG_.*)|(MULT_.*)|(PFRAG_.*)|(LIP_.*)|(CAT_.*)$

Example CURIE

matrixdb.association:P00747__P07355

Contact

Missing Contact

Identifier Space Owner

Institut de Biologie et Chimie des Protéines, CNRS, University of Lyon , Lyon-Gerland

Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 3 mappings to external registries with 1 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier P00747__P07355 is used to demonstrate the providers available for MatrixDB Association. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.