MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data.
- Prefix
massive- Keywords
- functional genomics metabolomics metaproteomics omics phenomics proteomics
- Links
- Homepage Repository
- Contact
- Mingxun Wang 0000-0001-7647-6097
- Pattern for Local Unique Identifiers
-
Local identifiers in MassIVE should match this regular expression:
^MSV\d+$ - Example Local Unique Identifier
- MSV000082131 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from MassIVE should match this regular expression:
^massive:MSV\d+$ - Example CURIE
- massive:MSV000082131
- Publications
-
- 2020 MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets
- 2020 The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics
- 2018 Assembling the Community-Scale Discoverable Human Proteome
- 2016 The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition
- 2016 Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
Metaregistry MassIVE
The metaregistry provides mappings between the Semantic Farm and other registries. There are 5 mappings to external registries for this resource with 3 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
MASSIVE
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.LYsiMd
|
|
Identifiers.org
|
miriam |
massive
|
|
N2T
|
n2t |
massive
|
|
UniProt
|
uniprot |
DB-0241
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier MSV000082131 is used to demonstrate the providers
available for MassIVE. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| MassIVE | massive |
https://www.omicsdi.org/dataset/massive/MSV000082131 |
| Bioregistry | bioregistry |
https://bioregistry.io/massive:MSV000082131 |
| Identifiers.org | miriam |
https://identifiers.org/massive:MSV000082131 |
| Name-to-Thing | n2t |
https://n2t.net/massive:MSV000082131 |
Extra Providers
Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Code | Name | URL |
|---|---|---|
|
MassIVE | https://massive.ucsd.edu/ProteoSAFe/QueryMSV?id=MSV000082131 |