MassIVE is a community resource developed by the NIH-funded Center for Computational Mass Spectrometry to promote the global, free exchange of mass spectrometry data.

Prefix

massive

Keywords

expression data functional genomics lipidomics mass spectrometry assay mass spectrum measurement metabolomics metaproteomics omics phenomics proteomic databases proteomics study design

Links

Homepage

Publications

2020 MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets

2020 The ProteomeXchange consortium in 2020: enabling 'big data' approaches in proteomics

2018 Assembling the Community-Scale Discoverable Human Proteome

2016 The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition

2016 Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking

Pattern for Local Unique Identifiers

Local unique identifiers in MassIVE should match this regular expression:
^MSV\d+$

Example Local Unique Identifier

MSV000082131   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from MassIVE should match this regular expression:
^massive:MSV\d+$

Example CURIE

massive:MSV000082131

Contact

Mingxun Wang   0000-0001-7647-6097

Identifier Space Owner

European Bioinformatics Institute

A summary of the relations in the Semantic Farm schema can be found here.

In Collection (2)

Resources mentioned in "Sharing biological data: why, when, and how" Synapse.org external links

Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 5 mappings to external registries with 3 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier MSV000082131 is used to demonstrate the providers available for MassIVE. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.