The Library of Network-Based Cellular Signatures (LINCS) Program aims to create a network-based understanding of biology by cataloging changes in gene expression and other cellular processes that occur when cells are exposed to a variety of perturbing agents. The LINCS small molecule collection is used as perturbagens in LINCS experiments. The small molecule metadata includes substance-specific batch information provided by each LINCS Data and Signature Generation Center (DSGC).

Prefix

lincs.smallmolecule

Alternative Prefixes

lincs

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in LINCS Small Molecule should match this regular expression:
^LSM-\d+$

Example Local Unique Identifier

LSM-6306   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from LINCS Small Molecule should match this regular expression:
^lincs\.smallmolecule:LSM-\d+$

Example CURIE

lincs.smallmolecule:LSM-6306

A summary of the relations in the Semantic Farm schema can be found here.

In Collection

ChEBI Data Sources

The metaregistry provides mappings between the Semantic Farm and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier LSM-6306 is used to demonstrate the providers available for LINCS Small Molecule. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.