KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction and reaction networks.
kegg.pathway
Local identifiers in KEGG pathway should match this
regular expression:
^\w{2,4}\d{5}$
Compact URIs (CURIEs) constructed from KEGG pathway should match
this regular expression:
^kegg\.pathway:\w{2,4}\d{5}$
A summary of the relations in the Semantic Farm schema can be found here.
The metaregistry provides mappings between the Semantic Farm and other registries. There are 8 mappings to external registries for this resource with 4 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
KEGG.PATHWAY
|
|
|
Biolink
|
biolink |
KEGG.PATHWAY
|
|
|
EDAM
|
edam |
2343
|
|
GO
|
go |
KEGG_PATHWAY
|
|
Identifiers.org
|
miriam |
kegg.pathway
|
|
N2T
|
n2t |
kegg.pathway
|
|
|
Prefix Commons
|
prefixcommons |
kegg.pathway
|
|
|
Wikidata
|
wikidata |
P665
|
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier rsk00410 is used to demonstrate the providers
available for KEGG pathway. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| KEGG pathway | kegg.pathway |
https://www.kegg.jp/pathway/rsk00410 |
| Bioregistry | bioregistry |
https://bioregistry.io/kegg.pathway:rsk00410 |
| Identifiers.org | miriam |
https://identifiers.org/kegg.pathway:rsk00410 |
| Name-to-Thing | n2t |
https://n2t.net/kegg.pathway:rsk00410 |
Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Code | Name | URL |
|---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/kegg.pathway:rsk00410 |