An experimental run, served thrugh the ENA

Comment

https://www.insdc.org/ is the authoritative source for INSDC. However, confusingly, they don't mention runs in this table. I think we should ask them to include. ENA is a partner and they have documentation here. Runs | (E\|D\|S)RR[0-9]{6,} | ERR123456 -- | -- | --

Prefix

insdc.run

Links

Homepage Request Discussion

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in International Nucleotide Sequence Database Collaboration (INSDC) Run should match this regular expression:
^(E|D|S)RR[0-9]{6,}$

Example Local Unique Identifier

ERR436051   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from International Nucleotide Sequence Database Collaboration (INSDC) Run should match this regular expression:
^insdc\.run:(E|D|S)RR[0-9]{6,}$

Example CURIE

insdc.run:ERR436051

Contributors

• submitter Chris Mungall   0000-0002-6601-2165   cmungall

Reviewer

Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt

A summary of the relations in the Semantic Farm schema can be found here.

Has incoming URI collisions

The following resources share a URI format string with insdc.run:
ena.embl

When generating an extended prefix map, their respective CURIE prefixes and URI prefixes are merged into the record for insdc.run. If you believe that these are distinct semantic spaces and should not be merged, please open a new issue on the Semantic Farm issue tracker for discussion.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier ERR436051 is used to demonstrate the providers available for International Nucleotide Sequence Database Collaboration (INSDC) Run. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.