The International Nucleotide Sequence Database Collaboration (INSDC) consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences.

Prefix

insdc

Keywords

dna

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in Nucleotide Sequence Database should match this regular expression:
^([A-Z]\d{5}|[A-Z]{2}\d{6}|[A-Z]{4,6}\d{8,10}|[A-J][A-Z]{2}\d{5})(\.\d+)?$

Example Local Unique Identifier

X58356   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Nucleotide Sequence Database should match this regular expression:
^insdc:([A-Z]\d{5}|[A-Z]{2}\d{6}|[A-Z]{4,6}\d{8,10}|[A-J][A-Z]{2}\d{5})(\.\d+)?$

Example CURIE

insdc:X58356

Publications

• 2024 The international nucleotide sequence database collaboration (INSDC): enhancing global participation
• 1990 Recent changes in the GenBank On-line Service
• 2007 GenBank
• 2006 EMBL Nucleotide Sequence Database in 2006
• 2002 Nucleotide sequence database policies

A summary of the relations in the Semantic Farm schema can be found here.

Has incoming URI collisions

The following resources share a URI format string with insdc:
nucleotide

When generating an extended prefix map, their respective CURIE prefixes and URI prefixes are merged into the record for insdc. If you believe that these are distinct semantic spaces and should not be merged, please open a new issue on the Semantic Farm issue tracker for discussion.

In Collection

Synapse.org external links

The metaregistry provides mappings between the Semantic Farm and other registries. There are 6 mappings to external registries for this resource with 2 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier X58356 is used to demonstrate the providers available for Nucleotide Sequence Database. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.