The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the more than 600 prokaryote species that are present in the human oral cavity. It contains genomic information based on a curated 16S rRNA gene-based provisional naming scheme, and taxonomic information. This datatype contains genomic sequence information.

Prefix

homd.seq

Keywords

genome microbial

Links

Homepage

Contact

Tsute Chen   0000-0001-6689-317X   tsute

Pattern for Local Unique Identifiers

Local identifiers in HOMD Sequence Metainformation should match this regular expression:
^SEQF\d+(?:\.\d+)?$

Example Local Unique Identifier

SEQF1003.1   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from HOMD Sequence Metainformation should match this regular expression:
^homd\.seq:SEQF\d+(?:\.\d+)?$

Example CURIE

homd.seq:SEQF1003.1

Publications

2010 The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information

The metaregistry provides mappings between the Semantic Farm and other registries. There are 4 mappings to external registries for this resource with 1 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier SEQF1003.1 is used to demonstrate the providers available for HOMD Sequence Metainformation. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Additional providers curated in the Semantic Farm are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.