Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This datatype refers to taxonomic information in Gramene.

Prefix

gramene.taxonomy

Links

Homepage

Pattern for Local Unique Identifiers

Local identifiers in Gramene Taxonomy should match this regular expression:
^\d+$

Example Local Unique Identifier

013681   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Gramene Taxonomy should match this regular expression:
^gramene\.taxonomy:\d+$

Example CURIE

gramene.taxonomy:013681

Namespace Embedded in LUI

This resource has been annotated by the Semantic Farm as having a potential namespace embedded in LUI. This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known as a banana) and therefore look like a CURIE. For , the banana looks like GR_tax:. Therefore, you may see local unique identifiers for this resource that look like GR_tax:013681 (instead of the canonical form 013681) and CURIEs for this resource that look like gramene.taxonomy:GR_tax:013681 (instead of the canonical form gramene.taxonomy:013681). The Semantic Farm will automatically strip off the banana when standardizing local unique identifiers and CURIEs.

Contact

Missing Contact

Identifier Space Owner

Cold Spring Harbor Laboratory

Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 3 mappings to external registries with 1 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 013681 is used to demonstrate the providers available for Gramene Taxonomy. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.