The GenPept database is a collection of sequences based on translations from annotated coding regions in GenBank.
- Prefix
genpept- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in GenPept should match this regular expression:
^\w{3}\d{5}(\.\d+)?$ - Example Local Unique Identifier
- CAA71118.1 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from GenPept should match this regular expression:
^genpept:\w{3}\d{5}(\.\d+)?$ - Example CURIE
- genpept:CAA71118.1
Metaregistry GenPept
The metaregistry provides mappings between the Semantic Farm and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
GENPEPT
|
|
Identifiers.org
|
miriam |
genpept
|
|
N2T
|
n2t |
genpept
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier CAA71118.1 is used to demonstrate the providers
available for GenPept. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| GenPept | genpept |
https://www.ncbi.nlm.nih.gov/protein/CAA71118.1?report=genpept |
| Bioregistry | bioregistry |
https://bioregistry.io/genpept:CAA71118.1 |
| Identifiers.org | miriam |
https://identifiers.org/genpept:CAA71118.1 |
| Name-to-Thing | n2t |
https://n2t.net/genpept:CAA71118.1 |