The GDC Data Portal is a robust data-driven platform that allows cancer researchers and bioinformaticians to search and download cancer data for analysis.
- Prefix
gdc- Links
- Homepage
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local unique identifiers in Genomic Data Commons Data Portal should match this
regular expression:
^[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$ - Example Local Unique Identifier
- ae8c77fe-e6c8-44d5-8265-4a38c637bbef Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Genomic Data Commons Data Portal should match
this regular expression:
^gdc:[a-z0-9]{8}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{4}-[a-z0-9]{12}$ - Example CURIE
- gdc:ae8c77fe-e6c8-44d5-8265-4a38c637bbef
Contacts
- Contact
- Missing Contact
Ontology
A summary of the relations in the Semantic Farm schema can be found here.
- In Collection (1)
- Synapse.org external links
Mappings to External Registries
Mappings from records in Semantic Farm to external registries comprises the metaregistry. This resource has 3 mappings to external registries with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
GDC
|
|
Identifiers.org
|
miriam |
gdc
|
|
N2T
|
n2t |
gdc
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier ae8c77fe-e6c8-44d5-8265-4a38c637bbef is used to demonstrate the providers
available for Genomic Data Commons Data Portal. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.